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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
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X
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Z
A
AbsBotVertBoundaryConditionCalculator (class in pylag.boundary_conditions)
AbsorbingHorizBoundaryConditionCalculator (class in pylag.boundary_conditions)
add_colour_bar() (pylag.processing.plot.GOTMPlotter method)
add_particle() (pylag.processing.release_zone.ReleaseZone method)
AdvDiffMilstein1DItMethod (class in pylag.numerics)
AdvDiffMilstein3DItMethod (class in pylag.numerics)
AdvRK42DItMethod (class in pylag.numerics)
AdvRK43DItMethod (class in pylag.numerics)
age (pylag.particle_cpp_wrapper.ParticleSmartPtr attribute)
angle_between_two_unit_vectors_wrapper() (in module pylag.math)
Animation (class in pylag.processing.animation)
apply_wrapper() (pylag.boundary_conditions.HorizBoundaryConditionCalculator method)
(pylag.boundary_conditions.VertBoundaryConditionCalculator method)
(pylag.mortality.MortalityCalculator method)
ArakawaADataReader (class in pylag.arakawa_a_data_reader)
ArakawaAPlotter (class in pylag.processing.plot)
ArakawaCPlotter (class in pylag.processing.plot)
area_of_a_spherical_triangle_wrapper() (in module pylag.math)
area_of_a_triangle_wrapper() (in module pylag.math)
ASCIIInitialParticleStateReader (class in pylag.particle_initialisation)
AtmosphereDataReader (class in pylag.atmosphere_data_reader)
B
BioModel (class in pylag.bio_model)
british_national_grid_to_lonlat() (in module pylag.processing.coordinate)
C
cartesian_to_geographic_coords_python() (in module pylag.math)
cartesian_to_geographic_coords_wrapper() (in module pylag.math)
cartesian_to_sigma_coords() (in module pylag.math)
CartesianPositionModifier (class in pylag.position_modifier)
check_valid_zone() (in module pylag.processing.coordinate)
close() (pylag.netcdf_logger.NetCDFLogger method)
(pylag.processing.ncview.Viewer method)
cm2inch() (in module pylag.processing.plot)
colourmap() (in module pylag.processing.plot)
CompositeDataReader (class in pylag.composite_data_reader)
compute_depths() (pylag.roms_data_reader.ROMSDataReader method)
compute_time_delta_between_datasets() (pylag.file_reader.FileReader method)
ConstantSettlingVelocityCalculator (class in pylag.settling)
create() (pylag.restart.RestartFileCreator method)
create_arakawa_a_grid_metrics_file() (in module pylag.grid_metrics)
create_cbar_ax() (in module pylag.processing.plot)
create_figure() (in module pylag.processing.plot)
create_fvcom_grid_metrics_file() (in module pylag.grid_metrics)
create_initial_positions_file_multi_group() (in module pylag.processing.input)
create_initial_positions_file_single_group() (in module pylag.processing.input)
create_particle_set() (pylag.processing.release_zone.ReleaseZone method)
create_release_zone() (in module pylag.processing.release_zone)
create_release_zones_along_cord() (in module pylag.processing.release_zone)
create_release_zones_around_shape() (in module pylag.processing.release_zone)
create_release_zones_around_shape_section() (in module pylag.processing.release_zone)
create_restart_file() (pylag.time_manager.TimeManager method)
CubicSpline1DInterpolator (class in pylag.interpolation)
current_release (pylag.time_manager.TimeManager attribute)
D
DataReader (class in pylag.data_reader)
DatasetReader (class in pylag.file_reader)
date (pylag.processing.ncview.Viewer property)
datetime_current (pylag.time_manager.TimeManager attribute)
datetime_end (pylag.time_manager.TimeManager attribute)
datetime_start (pylag.time_manager.TimeManager attribute)
DateTimeReader (class in pylag.datetime_reader)
DefaultDateTimeReader (class in pylag.datetime_reader)
DelayedSettlingVelocityCalculator (class in pylag.settling)
det_second_order_wrapper() (in module pylag.math)
det_third_order_wrapper() (in module pylag.math)
DiffConst2DItMethod (class in pylag.numerics)
DiffEuler1DItMethod (class in pylag.numerics)
DiffMilstein1DItMethod (class in pylag.numerics)
DiffMilstein2DItMethod (class in pylag.numerics)
DiffMilstein3DItMethod (class in pylag.numerics)
DiffNaive1DItMethod (class in pylag.numerics)
DiffNaive2DItMethod (class in pylag.numerics)
DiffVisser1DItMethod (class in pylag.numerics)
DiskFileNameReader (class in pylag.file_reader)
draw_grid() (pylag.processing.plot.ArakawaAPlotter method)
(pylag.processing.plot.ArakawaCPlotter method)
(pylag.processing.plot.FVCOMPlotter method)
E
euclidian_norm_wrapper() (in module pylag.math)
EulerParticleStateNumMethod (class in pylag.numerics)
F
FileNameReader (class in pylag.file_reader)
FileReader (class in pylag.file_reader)
find_host_using_global_search_wrapper() (pylag.data_reader.DataReader method)
(pylag.unstructured.Grid method)
find_host_using_local_search_wrapper() (pylag.data_reader.DataReader method)
(pylag.unstructured.Grid method)
find_host_using_particle_tracing_wrapper() (pylag.unstructured.Grid method)
find_host_wrapper() (pylag.data_reader.DataReader method)
fixed_depth (pylag.particle_cpp_wrapper.ParticleSmartPtr attribute)
FixedTimeMortalityCalculator (class in pylag.mortality)
FVCOMDataReader (class in pylag.fvcom_data_reader)
FVCOMDateTimeReader (class in pylag.datetime_reader)
FVCOMPlotter (class in pylag.processing.plot)
G
gauss() (in module pylag.random)
geographic_to_cartesian_coords_python() (in module pylag.math)
geographic_to_cartesian_coords_wrapper() (in module pylag.math)
GeographicPositionModifier (class in pylag.position_modifier)
get_adv_iterative_method() (in module pylag.numerics)
get_all_boolean_flags() (pylag.particle_cpp_wrapper.ParticleSmartPtr method)
get_all_diagnostic_variables() (pylag.particle_cpp_wrapper.ParticleSmartPtr method)
get_all_host_horizontal_elems() (pylag.particle_cpp_wrapper.ParticleSmartPtr method)
get_all_parameters() (pylag.particle_cpp_wrapper.ParticleSmartPtr method)
get_all_state_variables() (pylag.particle_cpp_wrapper.ParticleSmartPtr method)
get_area() (pylag.processing.release_zone.ReleaseZone method)
get_bio_time_step() (in module pylag.numerics)
get_boolean_flag() (pylag.particle_cpp_wrapper.ParticleSmartPtr method)
get_boundary_intersection_wrapper() (pylag.data_reader.DataReader method)
(pylag.unstructured.Grid method)
get_centre() (pylag.processing.release_zone.ReleaseZone method)
get_concentration_analytic() (pylag.mock.MockVelocityEddyDiffusivityDataReader method)
get_config() (in module pylag.configuration)
get_coordinate_variable_name() (in module pylag.variable_library)
get_coords() (pylag.processing.release_zone.ReleaseZone method)
get_data_type() (in module pylag.variable_library)
get_datetime() (pylag.datetime_reader.DateTimeReader method)
(pylag.datetime_reader.DefaultDateTimeReader method)
(pylag.datetime_reader.FVCOMDateTimeReader method)
get_datetime_reader() (in module pylag.datetime_reader)
get_depths() (pylag.processing.release_zone.ReleaseZone method)
get_diagnostic_variable() (pylag.particle_cpp_wrapper.ParticleSmartPtr method)
get_diagnostics() (pylag.model.OPTModel method)
get_diff_iterative_method() (in module pylag.numerics)
get_dimension_variable() (pylag.file_reader.FileReader method)
(pylag.mediator.Mediator method)
(pylag.mediator.SerialMediator method)
(pylag.parallel.mediator.MPIMediator method)
get_eastings() (pylag.processing.release_zone.ReleaseZone method)
get_element_area_wrapper() (pylag.unstructured.Grid method)
get_environmental_variable_wrapper() (pylag.data_reader.DataReader method)
get_epsg_code() (in module pylag.processing.coordinate)
get_euclidian_distance() (in module pylag.interpolation)
get_file_list() (in module pylag.processing.utils)
get_file_names() (pylag.file_reader.DiskFileNameReader method)
(pylag.file_reader.FileNameReader method)
get_global_time_step() (in module pylag.numerics)
get_grad_phi_wrapper() (pylag.unstructured.Grid method)
get_grid_bands() (in module pylag.processing.utils)
get_grid_names() (pylag.arakawa_a_data_reader.ArakawaADataReader method)
(pylag.atmosphere_data_reader.AtmosphereDataReader method)
(pylag.composite_data_reader.CompositeDataReader method)
(pylag.data_reader.DataReader method)
(pylag.fvcom_data_reader.FVCOMDataReader method)
(pylag.model.OPTModel method)
(pylag.regrid.regridder.Regridder method)
(pylag.roms_data_reader.ROMSDataReader method)
(pylag.waves_data_reader.WavesDataReader method)
get_grid_variable() (pylag.file_reader.FileReader method)
(pylag.mediator.Mediator method)
(pylag.mediator.SerialMediator method)
(pylag.parallel.mediator.MPIMediator method)
get_grid_variable_dimensions() (pylag.file_reader.FileReader method)
(pylag.mediator.Mediator method)
(pylag.mediator.SerialMediator method)
(pylag.parallel.mediator.MPIMediator method)
get_group_id() (pylag.processing.release_zone.ReleaseZone method)
get_horiz_boundary_condition_calculator() (in module pylag.boundary_conditions)
get_horizontal_eddy_diffusivity_derivative_wrapper() (pylag.data_reader.DataReader method)
get_horizontal_eddy_diffusivity_wrapper() (pylag.data_reader.DataReader method)
get_horizontal_velocity_wrapper() (pylag.data_reader.DataReader method)
get_host_horizontal_elem() (pylag.particle_cpp_wrapper.ParticleSmartPtr method)
get_initial_particle_state_reader() (in module pylag.particle_initialisation)
get_integer_type() (in module pylag.variable_library)
get_interpolator() (in module pylag.interpolation)
get_intersection_point_in_geographic_coordinates_wrapper() (in module pylag.math)
get_intersection_point_wrapper() (in module pylag.math)
get_invalid_value() (in module pylag.variable_library)
get_iterative_method() (in module pylag.numerics)
get_linear_fraction() (in module pylag.interpolation)
get_long_name() (in module pylag.variable_library)
get_mask_at_last_time_index() (pylag.file_reader.FileReader method)
(pylag.mediator.Mediator method)
(pylag.mediator.SerialMediator method)
(pylag.parallel.mediator.MPIMediator method)
get_mask_at_next_time_index() (pylag.file_reader.FileReader method)
(pylag.mediator.Mediator method)
(pylag.mediator.SerialMediator method)
(pylag.parallel.mediator.MPIMediator method)
get_model() (in module pylag.model_factory)
(in module pylag.parallel.model_factory)
get_mortality_calculator() (in module pylag.mortality)
get_northings() (pylag.processing.release_zone.ReleaseZone method)
get_num_method() (in module pylag.numerics)
get_number_of_particles() (pylag.processing.release_zone.ReleaseZone method)
get_parameter() (pylag.particle_cpp_wrapper.ParticleSmartPtr method)
get_particle_data() (pylag.model.OPTModel method)
(pylag.particle_cpp_wrapper.ParticleSmartPtr method)
(pylag.particle_initialisation.ASCIIInitialParticleStateReader method)
(pylag.particle_initialisation.InitialParticleStateReader method)
(pylag.particle_initialisation.RestartInitialParticleStateReader method)
get_particle_set() (pylag.processing.release_zone.ReleaseZone method)
get_particle_state_num_method() (in module pylag.numerics)
get_phi() (pylag.particle_cpp_wrapper.ParticleSmartPtr method)
(pylag.unstructured.Grid method)
(pylag.unstructured.UnstructuredCartesianGrid method)
(pylag.unstructured.UnstructuredGeographicGrid method)
get_position_analytic() (pylag.mock.MockVelocityDataReader method)
get_position_modifier() (in module pylag.position_modifier)
get_probability_density_1D() (in module pylag.processing.ensemble)
get_probability_density_2D() (in module pylag.processing.ensemble)
get_radius() (pylag.processing.release_zone.ReleaseZone method)
get_real_type() (in module pylag.variable_library)
get_rmse() (in module pylag.processing.fvcom)
(in module pylag.processing.gotm)
get_seed() (in module pylag.random)
get_settling_velocity_calculator() (in module pylag.settling)
get_simulator() (in module pylag.parallel.simulator)
(in module pylag.simulator)
get_state_variable() (pylag.particle_cpp_wrapper.ParticleSmartPtr method)
get_stokes_drift_calculator() (in module pylag.stokes_drift)
get_surface_stokes_drift_velocity_wrapper() (pylag.data_reader.DataReader method)
get_ten_meter_wind_velocity_wrapper() (pylag.data_reader.DataReader method)
get_time_at_last_time_index() (pylag.file_reader.FileReader method)
(pylag.mediator.Mediator method)
(pylag.mediator.SerialMediator method)
(pylag.parallel.mediator.MPIMediator method)
get_time_at_next_time_index() (pylag.file_reader.FileReader method)
(pylag.mediator.Mediator method)
(pylag.mediator.SerialMediator method)
(pylag.parallel.mediator.MPIMediator method)
get_time_dependent_variable_at_last_time_index() (pylag.file_reader.FileReader method)
(pylag.mediator.Mediator method)
(pylag.mediator.SerialMediator method)
(pylag.parallel.mediator.MPIMediator method)
get_time_dependent_variable_at_next_time_index() (pylag.file_reader.FileReader method)
(pylag.mediator.Mediator method)
(pylag.mediator.SerialMediator method)
(pylag.parallel.mediator.MPIMediator method)
get_time_direction() (in module pylag.numerics)
get_time_index() (in module pylag.processing.utils)
get_units() (in module pylag.variable_library)
get_unstructured_grid() (in module pylag.unstructured)
get_variable_dimensions() (pylag.file_reader.FileReader method)
(pylag.mediator.Mediator method)
(pylag.mediator.SerialMediator method)
(pylag.parallel.mediator.MPIMediator method)
get_variable_shape() (pylag.file_reader.FileReader method)
(pylag.mediator.Mediator method)
(pylag.mediator.SerialMediator method)
(pylag.parallel.mediator.MPIMediator method)
get_velocity_analytic() (pylag.mock.MockVelocityDataReader method)
get_velocity_wrapper() (pylag.data_reader.DataReader method)
(pylag.stokes_drift.StokesDriftCalculator method)
(pylag.velocity_aggregator.VelocityAggregator method)
(pylag.windage.WindageCalculator method)
get_vert_boundary_condition_calculator() (in module pylag.boundary_conditions)
get_vertical_eddy_diffusivity_analytic() (pylag.mock.MockVerticalDiffusivityDataReader method)
get_vertical_eddy_diffusivity_derivative_analytic() (pylag.mock.MockVerticalDiffusivityDataReader method)
get_vertical_eddy_diffusivity_derivative_wrapper() (pylag.data_reader.DataReader method)
get_vertical_eddy_diffusivity_wrapper() (pylag.data_reader.DataReader method)
get_windage_calculator() (in module pylag.windage)
get_xmin() (pylag.arakawa_a_data_reader.ArakawaADataReader method)
(pylag.composite_data_reader.CompositeDataReader method)
(pylag.data_reader.DataReader method)
(pylag.fvcom_data_reader.FVCOMDataReader method)
(pylag.gotm_data_reader.GOTMDataReader method)
(pylag.mock.MockOPTModelDataReader method)
(pylag.roms_data_reader.ROMSDataReader method)
get_ymin() (pylag.arakawa_a_data_reader.ArakawaADataReader method)
(pylag.composite_data_reader.CompositeDataReader method)
(pylag.data_reader.DataReader method)
(pylag.fvcom_data_reader.FVCOMDataReader method)
(pylag.gotm_data_reader.GOTMDataReader method)
(pylag.mock.MockOPTModelDataReader method)
(pylag.roms_data_reader.ROMSDataReader method)
get_zmax_wrapper() (pylag.data_reader.DataReader method)
get_zmin_wrapper() (pylag.data_reader.DataReader method)
get_zone_letter() (in module pylag.processing.coordinate)
get_zone_number() (in module pylag.processing.coordinate)
get_zone_polygon() (pylag.processing.release_zone.ReleaseZone method)
GOTMDataReader (class in pylag.gotm_data_reader)
GOTMPlotter (class in pylag.processing.plot)
great_circle_arc_segments_intersect_wrapper() (in module pylag.math)
Grid (class in pylag.unstructured)
H
haversine() (in module pylag.math)
HorizBoundaryConditionCalculator (class in pylag.boundary_conditions)
hovmoller() (pylag.processing.plot.GOTMPlotter method)
hovmoller_particles() (pylag.processing.plot.GOTMPlotter method)
I
in_domain (pylag.particle_cpp_wrapper.ParticleSmartPtr attribute)
in_vertical_boundary_layer (pylag.particle_cpp_wrapper.ParticleSmartPtr attribute)
init_particle_settling_velocity_wrapper() (pylag.settling.SettlingVelocityCalculator method)
InitialParticleStateReader (class in pylag.particle_initialisation)
inner_product_three_wrapper() (in module pylag.math)
inner_product_two_wrapper() (in module pylag.math)
interpolate() (pylag.regrid.regridder.Regridder method)
interpolate_in_space_wrapper() (pylag.unstructured.Grid method)
interpolate_in_time_and_space_2D_wrapper() (pylag.unstructured.Grid method)
interpolate_in_time_and_space_wrapper() (pylag.unstructured.Grid method)
interpolate_within_element_wrapper() (in module pylag.interpolation)
Interpolator (class in pylag.interpolation)
is_alive (pylag.particle_cpp_wrapper.ParticleSmartPtr attribute)
is_beached (pylag.particle_cpp_wrapper.ParticleSmartPtr attribute)
is_wet_wrapper() (pylag.data_reader.DataReader method)
ItMethod (class in pylag.numerics)
K
k_layer (pylag.particle_cpp_wrapper.ParticleSmartPtr attribute)
k_lower_layer (pylag.particle_cpp_wrapper.ParticleSmartPtr attribute)
k_upper_layer (pylag.particle_cpp_wrapper.ParticleSmartPtr attribute)
L
land_boundary_encounters (pylag.particle_cpp_wrapper.ParticleSmartPtr attribute)
Linear1DInterpolator (class in pylag.interpolation)
linear_interp() (in module pylag.interpolation)
list_vars() (pylag.processing.ncview.Viewer method)
lonlat_decimal_from_degminsec() (in module pylag.processing.coordinate)
lonlat_decimal_from_degminsec_wco() (in module pylag.processing.coordinate)
lonlat_from_utm() (in module pylag.processing.coordinate)
M
M (pylag.mock.MockVelocityEddyDiffusivityDataReader attribute)
main() (in module pylag.main)
(in module pylag.parallel.main)
make_animation() (pylag.processing.animation.Animation method)
make_image() (pylag.processing.animation.Animation method)
(pylag.processing.animation.ParticleTrajectoryAnimation method)
Mediator (class in pylag.mediator)
MockAtmosphereDataReader (class in pylag.mock)
MockHorizontalEddyDiffusivityDataReader (class in pylag.mock)
MockOceanDataReader (class in pylag.mock)
MockOneDNumMethod (class in pylag.mock)
MockOPTModelDataReader (class in pylag.mock)
MockThreeDNumMethod (class in pylag.mock)
MockTwoDNumMethod (class in pylag.mock)
MockVelocityDataReader (class in pylag.mock)
MockVelocityEddyDiffusivityDataReader (class in pylag.mock)
MockVerticalDiffusivityDataReader (class in pylag.mock)
MockWavesDataReader (class in pylag.mock)
module
pylag
pylag.arakawa_a_data_reader
pylag.atmosphere_data_reader
pylag.bio_model
pylag.boundary_conditions
pylag.composite_data_reader
pylag.configuration
pylag.data_reader
pylag.data_types_python
pylag.datetime_reader
pylag.delta
pylag.exceptions
pylag.file_reader
pylag.fvcom_data_reader
pylag.gotm_data_reader
pylag.grid_metrics
pylag.interpolation
pylag.main
pylag.math
pylag.mediator
pylag.mock
pylag.model
pylag.model_factory
pylag.mortality
pylag.netcdf_logger
pylag.numerics
pylag.parallel
pylag.parallel.main
pylag.parallel.mediator
pylag.parallel.model_factory
pylag.parallel.simulator
pylag.parameters
pylag.particle_cpp_wrapper
pylag.particle_initialisation
pylag.position_modifier
pylag.processing
pylag.processing.animation
pylag.processing.coordinate
pylag.processing.ensemble
pylag.processing.fvcom
pylag.processing.gotm
pylag.processing.input
pylag.processing.ncview
pylag.processing.plot
pylag.processing.release_zone
pylag.processing.utils
pylag.random
pylag.regrid
pylag.regrid.regridder
pylag.restart
pylag.roms_data_reader
pylag.settling
pylag.simulator
pylag.spline_cpp_wrapper
pylag.stokes_drift
pylag.time_manager
pylag.unstructured
pylag.utils
pylag.variable_library
pylag.velocity_aggregator
pylag.version
pylag.waves_data_reader
pylag.windage
MortalityCalculator (class in pylag.mortality)
MPIMediator (class in pylag.parallel.mediator)
N
NetCDFDatasetReader (class in pylag.file_reader)
NetCDFLogger (class in pylag.netcdf_logger)
new_simulation() (pylag.time_manager.TimeManager method)
number_of_particle_releases (pylag.time_manager.TimeManager attribute)
NumMethod (class in pylag.numerics)
O
omega_interfaces (pylag.particle_cpp_wrapper.ParticleSmartPtr attribute)
omega_layers (pylag.particle_cpp_wrapper.ParticleSmartPtr attribute)
OPTModel (class in pylag.model)
OS0NumMethod (class in pylag.numerics)
OS1NumMethod (class in pylag.numerics)
P
ParticleSmartPtr (class in pylag.particle_cpp_wrapper)
ParticleStateNumMethod (class in pylag.numerics)
ParticleTrajectoryAnimation (class in pylag.processing.animation)
plot_field() (pylag.processing.plot.ArakawaAPlotter method)
(pylag.processing.plot.ArakawaCPlotter method)
(pylag.processing.plot.FVCOMPlotter method)
plot_lines() (pylag.processing.plot.ArakawaCPlotter method)
(pylag.processing.plot.PyLagPlotter method)
plot_pathlines() (pylag.processing.plot.GOTMPlotter method)
plot_quiver() (pylag.processing.plot.ArakawaAPlotter method)
(pylag.processing.plot.FVCOMPlotter method)
plot_scatter() (pylag.processing.plot.GOTMPlotter method)
PositionModifier (class in pylag.position_modifier)
preprocess_array() (pylag.processing.plot.ArakawaAPlotter method)
ProbabilisticMortalityCalculator (class in pylag.mortality)
profile() (pylag.processing.plot.GOTMPlotter method)
pylag
module
pylag.arakawa_a_data_reader
module
pylag.atmosphere_data_reader
module
pylag.bio_model
module
pylag.boundary_conditions
module
pylag.composite_data_reader
module
pylag.configuration
module
pylag.data_reader
module
pylag.data_types_python
module
pylag.datetime_reader
module
pylag.delta
module
pylag.exceptions
module
pylag.file_reader
module
pylag.fvcom_data_reader
module
pylag.gotm_data_reader
module
pylag.grid_metrics
module
pylag.interpolation
module
pylag.main
module
pylag.math
module
pylag.mediator
module
pylag.mock
module
pylag.model
module
pylag.model_factory
module
pylag.mortality
module
pylag.netcdf_logger
module
pylag.numerics
module
pylag.parallel
module
pylag.parallel.main
module
pylag.parallel.mediator
module
pylag.parallel.model_factory
module
pylag.parallel.simulator
module
pylag.parameters
module
pylag.particle_cpp_wrapper
module
pylag.particle_initialisation
module
pylag.position_modifier
module
pylag.processing
module
pylag.processing.animation
module
pylag.processing.coordinate
module
pylag.processing.ensemble
module
pylag.processing.fvcom
module
pylag.processing.gotm
module
pylag.processing.input
module
pylag.processing.ncview
module
pylag.processing.plot
module
pylag.processing.release_zone
module
pylag.processing.utils
module
pylag.random
module
pylag.regrid
module
pylag.regrid.regridder
module
pylag.restart
module
pylag.roms_data_reader
module
pylag.settling
module
pylag.simulator
module
pylag.spline_cpp_wrapper
module
pylag.stokes_drift
module
pylag.time_manager
module
pylag.unstructured
module
pylag.utils
module
pylag.variable_library
module
pylag.velocity_aggregator
module
pylag.version
module
pylag.waves_data_reader
module
pylag.windage
module
PyLagException
PyLagOutOfBoundsError
PyLagPlotter (class in pylag.processing.plot)
PyLagRuntimeError
PyLagTypeError
PyLagValueError
Pymt19937 (class in pylag.random)
R
read_data() (pylag.arakawa_a_data_reader.ArakawaADataReader method)
(pylag.atmosphere_data_reader.AtmosphereDataReader method)
(pylag.composite_data_reader.CompositeDataReader method)
(pylag.data_reader.DataReader method)
(pylag.fvcom_data_reader.FVCOMDataReader method)
(pylag.gotm_data_reader.GOTMDataReader method)
(pylag.roms_data_reader.ROMSDataReader method)
(pylag.waves_data_reader.WavesDataReader method)
read_dataset() (pylag.file_reader.DatasetReader method)
(pylag.file_reader.NetCDFDatasetReader method)
read_input_data() (pylag.model.OPTModel method)
RefHorizCartesianBoundaryConditionCalculator (class in pylag.boundary_conditions)
RefHorizGeographicBoundaryConditionCalculator (class in pylag.boundary_conditions)
RefVertBoundaryConditionCalculator (class in pylag.boundary_conditions)
Regridder (class in pylag.regrid.regridder)
ReleaseZone (class in pylag.processing.release_zone)
remove_line_plots() (pylag.processing.plot.ArakawaCPlotter method)
(pylag.processing.plot.PyLagPlotter method)
RestartFileCreator (class in pylag.restart)
RestartInitialParticleStateReader (class in pylag.particle_initialisation)
restore_to_fixed_depth (pylag.particle_cpp_wrapper.ParticleSmartPtr attribute)
RestoringHorizBoundaryConditionCalculator (class in pylag.boundary_conditions)
ROMSDataReader (class in pylag.roms_data_reader)
rotate_axes_wrapper() (in module pylag.math)
rotate_vector() (pylag.roms_data_reader.ROMSDataReader method)
rotate_x_wrapper() (in module pylag.math)
rotate_y_wrapper() (in module pylag.math)
rotate_z_wrapper() (in module pylag.math)
round_time() (in module pylag.processing.utils)
(in module pylag.utils)
run() (pylag.parallel.simulator.Simulator method)
(pylag.parallel.simulator.TraceSimulator method)
(pylag.simulator.Simulator method)
(pylag.simulator.TraceSimulator method)
S
scatter() (pylag.processing.plot.ArakawaCPlotter method)
(pylag.processing.plot.PyLagPlotter method)
seed() (in module pylag.random)
(pylag.model.OPTModel method)
SerialMediator (class in pylag.mediator)
set_age() (pylag.particle_cpp_wrapper.ParticleSmartPtr method)
set_all_boolean_flags() (pylag.particle_cpp_wrapper.ParticleSmartPtr method)
set_all_diagnostic_variables() (pylag.particle_cpp_wrapper.ParticleSmartPtr method)
set_all_host_horizontal_elems() (pylag.particle_cpp_wrapper.ParticleSmartPtr method)
set_all_parameters() (pylag.particle_cpp_wrapper.ParticleSmartPtr method)
set_all_phis() (pylag.particle_cpp_wrapper.ParticleSmartPtr method)
set_all_state_variables() (pylag.particle_cpp_wrapper.ParticleSmartPtr method)
set_boolean_flag() (pylag.particle_cpp_wrapper.ParticleSmartPtr method)
set_default_location_wrapper() (pylag.data_reader.DataReader method)
(pylag.unstructured.Grid method)
set_diagnostic_variable() (pylag.particle_cpp_wrapper.ParticleSmartPtr method)
set_group_id() (pylag.processing.release_zone.ReleaseZone method)
set_host_horizontal_elem() (pylag.particle_cpp_wrapper.ParticleSmartPtr method)
set_initial_particle_properties_wrapper() (pylag.mortality.MortalityCalculator method)
set_local_coordinates_wrapper() (pylag.data_reader.DataReader method)
(pylag.unstructured.Grid method)
set_parameter() (pylag.particle_cpp_wrapper.ParticleSmartPtr method)
set_particle_data() (pylag.model.OPTModel method)
set_particle_settling_velocity_wrapper() (pylag.settling.SettlingVelocityCalculator method)
set_phi() (pylag.particle_cpp_wrapper.ParticleSmartPtr method)
set_spatial_coordinates() (pylag.regrid.regridder.Regridder method)
set_state_variable() (pylag.particle_cpp_wrapper.ParticleSmartPtr method)
set_title() (pylag.processing.plot.ArakawaCPlotter method)
(pylag.processing.plot.GOTMPlotter method)
(pylag.processing.plot.PyLagPlotter method)
set_vertical_grid_vars_wrapper() (pylag.data_reader.DataReader method)
SettlingVelocityCalculator (class in pylag.settling)
setup_data_access() (pylag.arakawa_a_data_reader.ArakawaADataReader method)
(pylag.atmosphere_data_reader.AtmosphereDataReader method)
(pylag.composite_data_reader.CompositeDataReader method)
(pylag.data_reader.DataReader method)
(pylag.file_reader.FileReader method)
(pylag.fvcom_data_reader.FVCOMDataReader method)
(pylag.gotm_data_reader.GOTMDataReader method)
(pylag.mediator.Mediator method)
(pylag.mediator.SerialMediator method)
(pylag.parallel.mediator.MPIMediator method)
(pylag.roms_data_reader.ROMSDataReader method)
(pylag.waves_data_reader.WavesDataReader method)
setup_input_data_access() (pylag.model.OPTModel method)
shepard_interpolation_wrapper() (pylag.unstructured.Grid method)
sigma_to_cartesian_coords() (in module pylag.math)
sigma_to_z() (in module pylag.fvcom_data_reader)
Simulator (class in pylag.parallel.simulator)
(class in pylag.simulator)
SplineWrapper (class in pylag.spline_cpp_wrapper)
status (pylag.particle_cpp_wrapper.ParticleSmartPtr attribute)
StdNumMethod (class in pylag.numerics)
step() (pylag.mock.MockOneDNumMethod method)
(pylag.mock.MockThreeDNumMethod method)
(pylag.mock.MockTwoDNumMethod method)
step_wrapper() (pylag.numerics.NumMethod method)
StokesDriftCalculator (class in pylag.stokes_drift)
SurfaceStokesDriftCalculator (class in pylag.stokes_drift)
sync() (pylag.netcdf_logger.NetCDFLogger method)
sync_data_to_disk() (pylag.time_manager.TimeManager method)
T
TestNumMethod (class in pylag.numerics)
time (pylag.processing.ncview.Viewer property)
(pylag.time_manager.TimeManager attribute)
time_end (pylag.time_manager.TimeManager attribute)
time_series() (pylag.processing.plot.GOTMPlotter method)
time_step (pylag.time_manager.TimeManager attribute)
TimeManager (class in pylag.time_manager)
to_ndarray() (in module pylag.processing.coordinate)
to_string_wrapper() (in module pylag.particle_cpp_wrapper)
TraceSimulator (class in pylag.parallel.simulator)
(class in pylag.simulator)
U
u_to_rho() (pylag.roms_data_reader.ROMSDataReader method)
uniform() (in module pylag.random)
unit_vector_wrapper() (in module pylag.math)
UnstructuredCartesianGrid (class in pylag.unstructured)
UnstructuredGeographicGrid (class in pylag.unstructured)
update() (pylag.model.OPTModel method)
update_current_time() (pylag.time_manager.TimeManager method)
update_reading_frames() (pylag.file_reader.FileReader method)
(pylag.mediator.Mediator method)
(pylag.mediator.SerialMediator method)
(pylag.parallel.mediator.MPIMediator method)
utm_from_lonlat() (in module pylag.processing.coordinate)
V
v_to_rho() (pylag.roms_data_reader.ROMSDataReader method)
var_info() (pylag.processing.ncview.Viewer method)
vector_product_wrapper() (in module pylag.math)
VelocityAggregator (class in pylag.velocity_aggregator)
VertBoundaryConditionCalculator (class in pylag.boundary_conditions)
Viewer (class in pylag.processing.ncview)
W
WavesDataReader (class in pylag.waves_data_reader)
WindageCalculator (class in pylag.windage)
write() (pylag.netcdf_logger.NetCDFLogger method)
write_group_ids() (pylag.netcdf_logger.NetCDFLogger method)
write_output_to_file() (pylag.time_manager.TimeManager method)
X
x1 (pylag.particle_cpp_wrapper.ParticleSmartPtr attribute)
x2 (pylag.particle_cpp_wrapper.ParticleSmartPtr attribute)
x3 (pylag.particle_cpp_wrapper.ParticleSmartPtr attribute)
Z
ZeroDeflectionWindageCalculator (class in pylag.windage)
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